PoplarV1, Main, Exploration, bibRecord, 001D41

Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana.

Identifieur interne : 001D41 ( Main/Exploration ); précédent : 001D40; suivant : 001D42

Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana.

Source :

International journal of molecular sciences [ 1422-0067 ] ; 2015.

RBID : pubmed:26307965

Descripteurs français

KwdFr :
- Analyse de profil d'expression de gènes (méthodes), Aquaporines (génétique), Aquaporines (métabolisme), Famille multigénique (MeSH), Génome végétal (MeSH), Musa (croissance et développement), Musa (génétique), Musa (physiologie), Phylogenèse (MeSH), Protéines végétales (génétique), Protéines végétales (métabolisme), Régulation de l'expression des gènes au cours du développement (MeSH), Régulation de l'expression des gènes végétaux (MeSH), Spécificité d'organe (MeSH), Stress physiologique (MeSH).
MESH :
- croissance et développement : Musa.
- génétique : Aquaporines, Musa, Protéines végétales.
- métabolisme : Aquaporines, Protéines végétales.
- méthodes : Analyse de profil d'expression de gènes.
- physiologie : Musa.
- Famille multigénique, Génome végétal, Phylogenèse, Régulation de l'expression des gènes au cours du développement, Régulation de l'expression des gènes végétaux, Spécificité d'organe, Stress physiologique.

English descriptors

KwdEn :
- Aquaporins (genetics), Aquaporins (metabolism), Gene Expression Profiling (methods), Gene Expression Regulation, Developmental (MeSH), Gene Expression Regulation, Plant (MeSH), Genome, Plant (MeSH), Multigene Family (MeSH), Musa (genetics), Musa (growth & development), Musa (physiology), Organ Specificity (MeSH), Phylogeny (MeSH), Plant Proteins (genetics), Plant Proteins (metabolism), Stress, Physiological (MeSH).
MESH :
- chemical , genetics : Aquaporins, Plant Proteins.
- chemical , metabolism : Aquaporins, Plant Proteins.
- genetics : Musa.
- growth & development : Musa.
- methods : Gene Expression Profiling.
- physiology : Musa.
- Gene Expression Regulation, Developmental, Gene Expression Regulation, Plant, Genome, Plant, Multigene Family, Organ Specificity, Phylogeny, Stress, Physiological.

Abstract

Aquaporins (AQPs) function to selectively control the flow of water and other small molecules through biological membranes, playing crucial roles in various biological processes. However, little information is available on the AQP gene family in bananas. In this study, we identified 47 banana AQP genes based on the banana genome sequence. Evolutionary analysis of AQPs from banana, Arabidopsis, poplar, and rice indicated that banana AQPs (MaAQPs) were clustered into four subfamilies. Conserved motif analysis showed that all banana AQPs contained the typical AQP-like or major intrinsic protein (MIP) domain. Gene structure analysis suggested the majority of MaAQPs had two to four introns with a highly specific number and length for each subfamily. Expression analysis of MaAQP genes during fruit development and postharvest ripening showed that some MaAQP genes exhibited high expression levels during these stages, indicating the involvement of MaAQP genes in banana fruit development and ripening. Additionally, some MaAQP genes showed strong induction after stress treatment and therefore, may represent potential candidates for improving banana resistance to abiotic stress. Taken together, this study identified some excellent tissue-specific, fruit development- and ripening-dependent, and abiotic stress-responsive candidate MaAQP genes, which could lay a solid foundation for genetic improvement of banana cultivars.

DOI: 10.3390/ijms160819728
PubMed: 26307965
PubMed Central: PMC4581322

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 001B53
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Le document en format XML

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<author><name sortKey="Jin, Zhiqiang" sort="Jin, Zhiqiang" uniqKey="Jin Z" first="Zhiqiang" last="Jin">Zhiqiang Jin</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana.</title>
<author><name sortKey="Hu, Wei" sort="Hu, Wei" uniqKey="Hu W" first="Wei" last="Hu">Wei Hu</name>
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<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Ding, Zehong" sort="Ding, Zehong" uniqKey="Ding Z" first="Zehong" last="Ding">Zehong Ding</name>
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<author><name sortKey="Wei, Yunxie" sort="Wei, Yunxie" uniqKey="Wei Y" first="Yunxie" last="Wei">Yunxie Wei</name>
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<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Liu, Juhua" sort="Liu, Juhua" uniqKey="Liu J" first="Juhua" last="Liu">Juhua Liu</name>
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<author><name sortKey="Miao, Hongxia" sort="Miao, Hongxia" uniqKey="Miao H" first="Hongxia" last="Miao">Hongxia Miao</name>
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<author><name sortKey="Lu, Zhiwei" sort="Lu, Zhiwei" uniqKey="Lu Z" first="Zhiwei" last="Lu">Zhiwei Lu</name>
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<author><name sortKey="Li, Meiying" sort="Li, Meiying" uniqKey="Li M" first="Meiying" last="Li">Meiying Li</name>
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<author><name sortKey="Xu, Biyu" sort="Xu, Biyu" uniqKey="Xu B" first="Biyu" last="Xu">Biyu Xu</name>
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<author><name sortKey="Jin, Zhiqiang" sort="Jin, Zhiqiang" uniqKey="Jin Z" first="Zhiqiang" last="Jin">Zhiqiang Jin</name>
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<series><title level="j">International journal of molecular sciences</title>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Aquaporins (genetics)</term>
<term>Aquaporins (metabolism)</term>
<term>Gene Expression Profiling (methods)</term>
<term>Gene Expression Regulation, Developmental (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Genome, Plant (MeSH)</term>
<term>Multigene Family (MeSH)</term>
<term>Musa (genetics)</term>
<term>Musa (growth & development)</term>
<term>Musa (physiology)</term>
<term>Organ Specificity (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Stress, Physiological (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (méthodes)</term>
<term>Aquaporines (génétique)</term>
<term>Aquaporines (métabolisme)</term>
<term>Famille multigénique (MeSH)</term>
<term>Génome végétal (MeSH)</term>
<term>Musa (croissance et développement)</term>
<term>Musa (génétique)</term>
<term>Musa (physiologie)</term>
<term>Phylogenèse (MeSH)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Régulation de l'expression des gènes au cours du développement (MeSH)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Spécificité d'organe (MeSH)</term>
<term>Stress physiologique (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Aquaporins</term>
<term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Aquaporins</term>
<term>Plant Proteins</term>
</keywords>
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<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Musa</term>
</keywords>
<keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Musa</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Aquaporines</term>
<term>Musa</term>
<term>Protéines végétales</term>
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<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Gene Expression Profiling</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Aquaporines</term>
<term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term>
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<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Musa</term>
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<keywords scheme="MESH" xml:lang="en"><term>Gene Expression Regulation, Developmental</term>
<term>Gene Expression Regulation, Plant</term>
<term>Genome, Plant</term>
<term>Multigene Family</term>
<term>Organ Specificity</term>
<term>Phylogeny</term>
<term>Stress, Physiological</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Famille multigénique</term>
<term>Génome végétal</term>
<term>Phylogenèse</term>
<term>Régulation de l'expression des gènes au cours du développement</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Spécificité d'organe</term>
<term>Stress physiologique</term>
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<front><div type="abstract" xml:lang="en">Aquaporins (AQPs) function to selectively control the flow of water and other small molecules through biological membranes, playing crucial roles in various biological processes. However, little information is available on the AQP gene family in bananas. In this study, we identified 47 banana AQP genes based on the banana genome sequence. Evolutionary analysis of AQPs from banana, Arabidopsis, poplar, and rice indicated that banana AQPs (MaAQPs) were clustered into four subfamilies. Conserved motif analysis showed that all banana AQPs contained the typical AQP-like or major intrinsic protein (MIP) domain. Gene structure analysis suggested the majority of MaAQPs had two to four introns with a highly specific number and length for each subfamily. Expression analysis of MaAQP genes during fruit development and postharvest ripening showed that some MaAQP genes exhibited high expression levels during these stages, indicating the involvement of MaAQP genes in banana fruit development and ripening. Additionally, some MaAQP genes showed strong induction after stress treatment and therefore, may represent potential candidates for improving banana resistance to abiotic stress. Taken together, this study identified some excellent tissue-specific, fruit development- and ripening-dependent, and abiotic stress-responsive candidate MaAQP genes, which could lay a solid foundation for genetic improvement of banana cultivars. </div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26307965</PMID>
<DateCompleted><Year>2016</Year>
<Month>05</Month>
<Day>17</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1422-0067</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>16</Volume>
<Issue>8</Issue>
<PubDate><Year>2015</Year>
<Month>Aug</Month>
<Day>20</Day>
</PubDate>
</JournalIssue>
<Title>International journal of molecular sciences</Title>
<ISOAbbreviation>Int J Mol Sci</ISOAbbreviation>
</Journal>
<ArticleTitle>Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana.</ArticleTitle>
<Pagination><MedlinePgn>19728-51</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.3390/ijms160819728</ELocationID>
<Abstract><AbstractText>Aquaporins (AQPs) function to selectively control the flow of water and other small molecules through biological membranes, playing crucial roles in various biological processes. However, little information is available on the AQP gene family in bananas. In this study, we identified 47 banana AQP genes based on the banana genome sequence. Evolutionary analysis of AQPs from banana, Arabidopsis, poplar, and rice indicated that banana AQPs (MaAQPs) were clustered into four subfamilies. Conserved motif analysis showed that all banana AQPs contained the typical AQP-like or major intrinsic protein (MIP) domain. Gene structure analysis suggested the majority of MaAQPs had two to four introns with a highly specific number and length for each subfamily. Expression analysis of MaAQP genes during fruit development and postharvest ripening showed that some MaAQP genes exhibited high expression levels during these stages, indicating the involvement of MaAQP genes in banana fruit development and ripening. Additionally, some MaAQP genes showed strong induction after stress treatment and therefore, may represent potential candidates for improving banana resistance to abiotic stress. Taken together, this study identified some excellent tissue-specific, fruit development- and ripening-dependent, and abiotic stress-responsive candidate MaAQP genes, which could lay a solid foundation for genetic improvement of banana cultivars. </AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Hu</LastName>
<ForeName>Wei</ForeName>
<Initials>W</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, Hainan, China. huwei2010916@126.com.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Hou</LastName>
<ForeName>Xiaowan</ForeName>
<Initials>X</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, Hainan, China. yimiyangguamghxw@163.com.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Huang</LastName>
<ForeName>Chao</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>College of Life Science and Technology, Huazhong University of Science & Technology (HUST), Wuhan 430074, Hubei, China. huangchao2005@hust.edu.cn.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yan</LastName>
<ForeName>Yan</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, Hainan, China. yanyan@itbb.org.cn.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Tie</LastName>
<ForeName>Weiwei</ForeName>
<Initials>W</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, Hainan, China. tieweiwei@itbb.org.cn.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ding</LastName>
<ForeName>Zehong</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, Hainan, China. dingzehong@itbb.org.cn.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wei</LastName>
<ForeName>Yunxie</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, Hainan, China. weiyunxie1989@126.com.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Juhua</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, Hainan, China. juhua69@126.com.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Miao</LastName>
<ForeName>Hongxia</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, Hainan, China. miaohongxia@itbb.org.cn.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lu</LastName>
<ForeName>Zhiwei</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, Hainan, China. luzhiweihn@126.com.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Meiying</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, Hainan, China. limeiying@itbb.org.cn.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Xu</LastName>
<ForeName>Biyu</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, Hainan, China. biyuxu@126.com.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Jin</LastName>
<ForeName>Zhiqiang</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Genetic Improvement of Bananas, Hainan Province, Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou 570102, Hainan, China. 18689846976@163.com.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2015</Year>
<Month>08</Month>
<Day>20</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>Switzerland</Country>
<MedlineTA>Int J Mol Sci</MedlineTA>
<NlmUniqueID>101092791</NlmUniqueID>
<ISSNLinking>1422-0067</ISSNLinking>
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<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D020346">Aquaporins</NameOfSubstance>
</Chemical>
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<NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance>
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<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
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<QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName>
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<MeshHeading><DescriptorName UI="D018507" MajorTopicYN="N">Gene Expression Regulation, Developmental</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005810" MajorTopicYN="N">Multigene Family</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D028521" MajorTopicYN="N">Musa</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009928" MajorTopicYN="N">Organ Specificity</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
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<MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013312" MajorTopicYN="N">Stress, Physiological</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Aquaporin (AQP)</Keyword>
<Keyword MajorTopicYN="N">abiotic stress</Keyword>
<Keyword MajorTopicYN="N">banana</Keyword>
<Keyword MajorTopicYN="N">development</Keyword>
<Keyword MajorTopicYN="N">expression analysis</Keyword>
<Keyword MajorTopicYN="N">fruit postharvest ripening</Keyword>
</KeywordList>
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<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year>
<Month>06</Month>
<Day>25</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="revised"><Year>2015</Year>
<Month>08</Month>
<Day>08</Day>
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<Day>12</Day>
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<Day>27</Day>
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<affiliations><list><country><li>République populaire de Chine</li>
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Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana.

Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana.

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